Fix `StructureQuery`
#872Comparing
padix-key:fix-structurequery
(e606d67
) withmain
(8f348b6
)0%
- Untouched
- 63
Benchmarks
63 total
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py+1%
150.6 µs149.2 µs
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+1%
185.6 µs184.6 µs
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
201.4 ms200.6 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
110.8 ms110.4 ms
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
492.3 µs490.7 µs
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
10.1 ms10.1 ms
benchmark_superimpose[superimpose]
benchmarks/structure/benchmark_superimpose.py0%
2.5 ms2.5 ms
benchmark_match_kmer_selection[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
459.1 µs458 µs
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.1 ms9.1 ms
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
575.1 µs573.8 µs
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
104.2 ms104 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
13 ms12.9 ms
benchmark_superimpose[superimpose_homologs]
benchmarks/structure/benchmark_superimpose.py0%
28.4 ms28.4 ms
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.5 ms9.4 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py0%
184.4 ms184.1 ms
benchmark_get_sequences[fasta_path1-ProteinSequence]
benchmarks/sequence/benchmark_fasta.py0%
8.8 ms8.8 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
128.6 ms128.4 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py0%
10 ms9.9 ms
benchmark_indexing_from_sequences[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.6 ms12.6 ms
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py0%
32.3 ms32.2 ms
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
624.3 µs623.6 µs
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py0%
7 ms7 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
541.5 µs540.9 µs
benchmark_compress
benchmarks/structure/benchmark_pdbx.py0%
698.9 ms698.2 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
13.2 ms13.2 ms
Commits
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main
8f348b6
+0.05%
Fix `StructureQuery`
e606d67
6 hours ago
by padix-key