Comparing
padix-key:fix-segments
(8900c8d
) withmain
(fe75450
)0%
- Untouched
- 98
No successful run was found on main ( c782ee5) during the generation of this report, so fe75450 was used instead as the comparison base. There might be some changes unrelated to this pull request in this report.
Benchmarks
98 total
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
542.3 µs540.7 µs
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py0%
184.7 ms184.2 ms
benchmark_serialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
199.6 ms199.1 ms
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
30.4 ms30.3 ms
benchmark_clustering[neighbor_joining]
benchmarks/sequence/benchmark_phylo.py0%
623.5 µs622.2 µs
benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
458.6 µs457.7 µs
benchmark_clustering[upgma]
benchmarks/sequence/benchmark_phylo.py0%
488.5 µs487.6 µs
benchmark_match_kmer_selection[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
459.7 µs459 µs
benchmark_set_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
8.1 ms8.1 ms
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
575.5 µs574.6 µs
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py0%
2 s2 s
benchmark_similar_kmers
benchmarks/sequence/align/benchmark_kmer.py0%
318.4 µs318 µs
benchmark_superimpose[superimpose_without_outliers]
benchmarks/structure/benchmark_superimpose.py0%
17.3 ms17.3 ms
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py0%
7 ms7 ms
benchmark_bond_list_creation
benchmarks/structure/benchmark_bonds.py0%
816.3 µs815.4 µs
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.1 ms9.1 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
105.5 ms105.4 ms
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py0%
32.3 ms32.2 ms
benchmark_encode
benchmarks/sequence/benchmark_alphabet.py0%
183.1 µs183 µs
benchmark_get_remark
benchmarks/structure/benchmark_pdb.py0%
758.6 µs758.1 µs
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
39 ms39 ms
benchmark_conversion[bond_type_matrix]
benchmarks/structure/benchmark_bonds.py0%
1.4 ms1.4 ms
benchmark_conversion[adjacency_matrix]
benchmarks/structure/benchmark_bonds.py0%
1.4 ms1.4 ms
benchmark_align_pairwise[align_local_gapped]
benchmarks/sequence/align/benchmark_pairwise.py0%
77 ms77 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
538.7 µs538.5 µs
Commits
Click on a commit to change the comparison rangeBase
main
fe75450
-0.01%
Fix missing stop entry for empty atom arrays
8900c8d
4 days ago
by padix-key