Fix failing `test_kekulization` test after RDKit update
#883Comparing
padix-key:fix-rdkit-test
(9c232d3
) withmain
(00d5b98
)0%
- Untouched
- 98
Benchmarks
98 total
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py+1%
15.2 ms15.1 ms
benchmark_clustering[neighbor_joining]
benchmarks/sequence/benchmark_phylo.py+1%
629.9 µs625.3 µs
benchmark_conversion[as_set]
benchmarks/structure/benchmark_bonds.py0%
860.5 µs857.2 µs
benchmark_connect[connect_via_residue_names]
benchmarks/structure/benchmark_bonds.py0%
50.9 ms50.7 ms
benchmark_get_structure
benchmarks/structure/benchmark_pdb.py0%
20.2 ms20.2 ms
benchmark_get_structure_with_bonds
benchmarks/structure/benchmark_pdb.py0%
77.6 ms77.4 ms
benchmark_align_pairwise[align_local_gapped]
benchmarks/sequence/align/benchmark_pairwise.py0%
76.9 ms76.7 ms
benchmark_connect[connect_via_distances]
benchmarks/structure/benchmark_bonds.py0%
26.1 ms26.1 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
81.8 ms81.6 ms
benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
12.9 ms12.9 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
124.9 ms124.6 ms
benchmark_set_structure
benchmarks/structure/benchmark_pdb.py0%
34.2 ms34.2 ms
benchmark_get_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
58.7 ms58.6 ms
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
110.2 ms110 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
13 ms12.9 ms
benchmark_structural_alphabet_methods[to_3di]
benchmarks/structure/benchmark_alphabet.py0%
10 ms10 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
10.1 ms10.1 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
105.5 ms105.4 ms
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
30.5 ms30.5 ms
benchmark_set_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
8.1 ms8.1 ms
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.2 ms9.1 ms
benchmark_set_structure_with_bonds
benchmarks/structure/benchmark_pdb.py0%
34.2 ms34.2 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py0%
700 ms699.8 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
13.3 ms13.3 ms
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.3 ms12.3 ms
Commits
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main
00d5b98
-0.17%
Fix failing `test_kekulization` test after RDKit update
9c232d3
2 days ago
by padix-key