Comparing
padix-key:fallback-bonds
(4e58775
) withmain
(2018578
)0%
- Untouched
- 63
Benchmarks
63 total
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py0%
7 ms7 ms
benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
12.9 ms12.9 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py0%
185.1 ms184.4 ms
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py0%
148.7 µs148.2 µs
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
124.5 ms124.2 ms
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py0%
324 ms323.1 ms
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
625.4 µs623.9 µs
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
81.5 ms81.3 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
540.2 µs539.1 µs
benchmark_superimpose[superimpose_homologs]
benchmarks/structure/benchmark_superimpose.py0%
28.4 ms28.4 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py0%
318.7 ms318.2 ms
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
105.9 ms105.7 ms
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
491.7 µs491.1 µs
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
574.3 µs573.6 µs
benchmark_score_threshold_rule[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
2 s2 s
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.2 ms9.1 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
13.2 ms13.2 ms
benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
10.2 ms10.2 ms
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.3 ms12.3 ms
benchmark_get_a3m_alignments
benchmarks/sequence/benchmark_fasta.py0%
576.2 ms575.9 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
13.3 ms13.3 ms
benchmark_indexing_from_sequences[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.6 ms12.6 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.3 ms12.3 ms
benchmark_get_assembly
benchmarks/structure/benchmark_pdbx.py0%
663.1 ms662.9 ms
benchmark_get_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
18.4 ms18.4 ms
Commits
Click on a commit to change the comparison rangeBase
main
2018578
-0.02%
Write single bonds to chem_comp_bond as fallback
4e58775
11 days ago
by padix-key