Comparing
padix-key:entity-id-annotation
(a8c23e2
) withmain
(2315f2a
)0%
- Untouched
- 98
Benchmarks
98 total
benchmark_encode
benchmarks/sequence/benchmark_alphabet.py-1%
183 µs185.2 µs
benchmark_clustering[neighbor_joining]
benchmarks/sequence/benchmark_phylo.py-1%
622.2 µs628.2 µs
benchmark_read
benchmarks/structure/benchmark_pdb.py+1%
3.6 ms3.5 ms
benchmark_find_connected
benchmarks/structure/benchmark_bonds.py-1%
305.3 µs307.9 µs
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py-1%
492.2 µs495.5 µs
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py-1%
574.4 µs577.9 µs
benchmark_conversion[as_set]
benchmarks/structure/benchmark_bonds.py+1%
863.7 µs858.8 µs
benchmark_get_all_bonds
benchmarks/structure/benchmark_bonds.py-1%
180.9 µs181.9 µs
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
30.5 ms30.4 ms
benchmark_conversion[get_all_bonds]
benchmarks/structure/benchmark_bonds.py0%
179.6 µs180.4 µs
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
106 ms105.5 ms
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
621.9 µs624.6 µs
benchmark_connect[connect_via_residue_names]
benchmarks/structure/benchmark_bonds.py0%
50.8 ms50.6 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py0%
184.6 ms183.9 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
184.8 µs185.4 µs
benchmark_similar_kmers
benchmarks/sequence/align/benchmark_kmer.py0%
319.3 µs318.4 µs
benchmark_get_sequences[fasta_path1-ProteinSequence]
benchmarks/sequence/benchmark_fasta.py0%
8.8 ms8.8 ms
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
540.8 µs542.3 µs
benchmark_get_bonds
benchmarks/structure/benchmark_bonds.py0%
15.3 ms15.3 ms
benchmark_conversion[as_array]
benchmarks/structure/benchmark_bonds.py0%
115.9 µs116.2 µs
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py0%
310.8 ms310.1 ms
benchmark_superimpose[superimpose]
benchmarks/structure/benchmark_superimpose.py0%
2.5 ms2.5 ms
benchmark_clustering[upgma]
benchmarks/sequence/benchmark_phylo.py0%
488.6 µs489.5 µs
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py0%
32.2 ms32.3 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py0%
317.5 ms316.9 ms
Commits
Click on a commit to change the comparison rangeBase
main
2315f2a
-0.04%
Add optional `entity_id` annotation
a8c23e2
3 months ago
by padix-key