padix-key:docs-hotfix - Branch - biotite-dev/biotite - CodSpeed

Blog Docs Changelog

Hotfix: failing gallery examples

#854Merged

Comparing

padix-key:docs-hotfix

(

b31c2a1

) with

main

(

169b7bf

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0%

Untouched: 63

Benchmarks

63 total

benchmark_superimpose[superimpose]

benchmarks/structure/benchmark_superimpose.py

+1%

2.5 ms2.5 ms

benchmark_deserialize_pdbx[bcif]

benchmarks/structure/benchmark_pdbx.py

0%

110.9 ms110.4 ms

benchmark_get_sequences[fasta_path1-ProteinSequence]

benchmarks/sequence/benchmark_fasta.py

0%

8.8 ms8.8 ms

benchmark_get_sequences[fasta_path0-NucleotideSequence]

benchmarks/sequence/benchmark_fasta.py

0%

184.9 ms184.2 ms

benchmark_match[KmerTable-None]

benchmarks/sequence/align/benchmark_kmers.py

0%

493.2 µs491.4 µs

benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

0%

12.9 ms12.9 ms

benchmark_match_table[BucketKmerTable(10000)-None]

benchmarks/sequence/align/benchmark_kmers.py

0%

13 ms13 ms

benchmark_match[BucketKmerTable(10000)-None]

benchmarks/sequence/align/benchmark_kmers.py

0%

575.4 µs574 µs

benchmark_match[KmerTable-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

0%

541.5 µs540.3 µs

benchmark_structural_alphabet_methods[to_3di]

benchmarks/structure/benchmark_alphabet.py

0%

10 ms10 ms

benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

0%

625.9 µs625.1 µs

benchmark_match_kmer_selection[KmerTable-None]

benchmarks/sequence/align/benchmark_kmers.py

0%

459.3 µs458.9 µs

benchmark_get_structure[bcif-False]

benchmarks/structure/benchmark_pdbx.py

0%

18.5 ms18.4 ms

test_pickle_and_unpickle[KmerTable-None]

benchmarks/sequence/align/benchmark_kmers.py

0%

39.1 ms39 ms

benchmark_superimpose[superimpose_structural_homologs]

benchmarks/structure/benchmark_superimpose.py

0%

32.3 ms32.2 ms

benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]

benchmarks/sequence/align/benchmark_kmers.py

0%

14.5 ms14.5 ms

benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

0%

13.3 ms13.3 ms

benchmark_compress

benchmarks/structure/benchmark_pdbx.py

0%

698.4 ms698.1 ms

benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

0%

17.6 ms17.6 ms

benchmark_score_threshold_rule[11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

0%

2 s2 s

benchmark_indexing_from_kmers[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

0%

13.2 ms13.2 ms

benchmark_indexing_from_sequences[None-KmerTable]

benchmarks/sequence/align/benchmark_kmers.py

0%

12.6 ms12.6 ms

test_pickle_and_unpickle[BucketKmerTable(10000)-None]

benchmarks/sequence/align/benchmark_kmers.py

0%

7.4 ms7.4 ms

test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]

benchmarks/sequence/align/benchmark_kmers.py

0%

7.4 ms7.4 ms

benchmark_lddt[False-all]

benchmarks/structure/benchmark_compare.py

0%

227.2 ms227.2 ms

Commits

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Base

main

169b7bf

-0.01%

Fix failing gallery examples

b31c2a1

8 days ago

by padix-key

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