Comparing
haoyu-haoyu:feat/clustalw-aln-format
(7e6fb6e
) withmain
(fe75450
)0%
- Untouched
- 98
Benchmarks
98 total
benchmark_structural_alphabet_methods[to_protein_blocks]
benchmarks/structure/benchmark_alphabet.py+1%
7 ms6.9 ms
benchmark_get_sequences[fasta_path0-NucleotideSequence]
benchmarks/sequence/benchmark_fasta.py0%
184.7 ms183.9 ms
benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
458.6 µs457.4 µs
benchmark_set_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py0%
8.1 ms8.1 ms
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
542.3 µs541.1 µs
benchmark_cell_list_creation
benchmarks/structure/benchmark_celllist.py0%
941.9 µs940.1 µs
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
575.5 µs574.5 µs
benchmark_match_kmer_selection[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
459.7 µs459 µs
benchmark_bond_list_creation
benchmarks/structure/benchmark_bonds.py0%
816.3 µs815 µs
benchmark_score_threshold_rule[None]
benchmarks/sequence/align/benchmark_kmers.py0%
2 s2 s
benchmark_match_kmer_selection[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
539.9 µs539.2 µs
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.1 ms9.1 ms
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py0%
32.3 ms32.2 ms
benchmark_conversion[as_array]
benchmarks/structure/benchmark_bonds.py0%
116 µs116 µs
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
492.9 µs492.6 µs
benchmark_get_remark
benchmarks/structure/benchmark_pdb.py0%
758.6 µs758.1 µs
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
30.4 ms30.4 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.2 ms9.2 ms
benchmark_score_threshold_rule[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
2 s2 s
benchmark_deserialize_pdbx[cif]
benchmarks/structure/benchmark_pdbx.py0%
105.5 ms105.5 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
13.3 ms13.3 ms
benchmark_get_assembly
benchmarks/structure/benchmark_pdbx.py0%
663.2 ms663.1 ms
benchmark_decode
benchmarks/sequence/benchmark_alphabet.py0%
3.4 ms3.4 ms
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
111.8 ms111.8 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
39 ms39 ms
Commits
Click on a commit to change the comparison rangeBase
main
fe75450
-0.07%
fix(clustal): apply review feedback on PR #880
7e6fb6e
28 days ago
by haoyu-haoyu