Comparing
davegrays:fix/get-assemblies
(9cac0dd
) withmain
(5377013
)0%
- Untouched
- 59
Benchmarks
59 total
benchmark_serialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py+1%
85.7 ms84.9 ms
benchmark_set_structure[bcif-False]
benchmarks/structure/benchmark_pdbx.py+1%
11.2 ms11.1 ms
benchmark_compress
benchmarks/structure/benchmark_pdbx.py+1%
570.3 ms566.9 ms
benchmark_get_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
82.7 ms82.3 ms
benchmark_match_table[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
13 ms12.9 ms
benchmark_set_structure[bcif-True]
benchmarks/structure/benchmark_pdbx.py0%
29.2 ms29.1 ms
benchmark_superimpose[superimpose_structural_homologs]
benchmarks/structure/benchmark_superimpose.py0%
40.5 ms40.4 ms
benchmark_match_kmer_selection[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
471.3 µs469.9 µs
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py0%
311.4 ms310.6 ms
benchmark_get_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
118.2 ms117.9 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
553.3 µs552 µs
benchmark_deserialize_pdbx[bcif]
benchmarks/structure/benchmark_pdbx.py0%
111 ms110.8 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py0%
299.1 ms298.5 ms
benchmark_kmer_decomposition[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
188 µs187.6 µs
benchmark_superimpose[superimpose_homologs]
benchmarks/structure/benchmark_superimpose.py0%
23.9 ms23.9 ms
benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
631.3 µs630.3 µs
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
108 ms107.8 ms
benchmark_set_structure[cif-True]
benchmarks/structure/benchmark_pdbx.py0%
129.7 ms129.6 ms
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
15.5 ms15.5 ms
benchmark_match[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
583.9 µs583.7 µs
test_pickle_and_unpickle[BucketKmerTable(10000)-None]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.4 ms
test_pickle_and_unpickle[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
7.4 ms7.4 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
39.1 ms39.1 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.4 ms9.4 ms
benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.5 ms12.5 ms
Commits
Click on a commit to change the comparison rangeBase
main
5377013
+0.07%
formatting
4fe816b
1 year ago
by davegrays-0.03%
formatting fix
040aa41
1 year ago
by davegrays0%
add test data
1316b41
1 year ago
by davegrays-0.01%
formatting
f801f6b
1 year ago
by davegrays+0.02%
foldseek fasta test file
b0ed34a
1 year ago
by davegrays+0.01%
fix sort by sym_id
e6e45fe
1 year ago
by davegrays+0.01%
skip 4zxb due to incorrect alignment
7cc3efa
1 year ago
by davegrays-0.12%
bug fix sorting an AtomArray or Stack
ebab690
1 year ago
by davegrays+0.11%
Make alignment resilient to missing terminal residues
09de73c
1 year ago
by padix-key-0.01%
More efficient assembly sorting
9cac0dd
1 year ago
by padix-key