Add pandas-style query functionality to `AtomArray` and `AtomArrayStack` objects
#815Comparing
Croydon-Brixton:feat/queries
(6ede054
) withmain
(ac856a2
)0%
- Untouched
- 59
Benchmarks
59 total
benchmark_kmer_decomposition[None]
benchmarks/sequence/align/benchmark_kmers.py+2%
153 µs150.7 µs
benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py+1%
9.4 ms9.3 ms
benchmark_match_table[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
15.2 ms15.1 ms
benchmark_lddt[False-atom]
benchmarks/structure/benchmark_compare.py0%
313.5 ms312.2 ms
benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
10.3 ms10.3 ms
benchmark_match[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
495.4 µs493.7 µs
benchmark_indexing_from_kmer_selection[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
12.4 ms12.4 ms
benchmark_match_kmer_selection[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
463.8 µs462.3 µs
benchmark_compress
benchmarks/structure/benchmark_pdbx.py0%
677.2 ms675.3 ms
benchmark_indexing_from_kmers[None-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
13.4 ms13.3 ms
benchmark_lddt[False-residue]
benchmarks/structure/benchmark_compare.py0%
325 ms324.2 ms
benchmark_lddt[False-chain]
benchmarks/structure/benchmark_compare.py0%
319.6 ms318.8 ms
benchmark_match_table[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
14.9 ms14.9 ms
test_pickle_and_unpickle[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
38.8 ms38.8 ms
benchmark_set_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
104.3 ms104.2 ms
benchmark_get_structure[cif-False]
benchmarks/structure/benchmark_pdbx.py0%
59.8 ms59.7 ms
benchmark_match[KmerTable-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
538.7 µs538 µs
benchmark_score_threshold_rule[11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
2 s2 s
benchmark_match_table[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
12.9 ms12.9 ms
test_pickle_and_unpickle[KmerTable-None]
benchmarks/sequence/align/benchmark_kmers.py0%
39 ms38.9 ms
benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
9.6 ms9.6 ms
benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]
benchmarks/sequence/align/benchmark_kmers.py0%
13.4 ms13.4 ms
benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]
benchmarks/sequence/align/benchmark_kmers.py0%
541.8 µs541.6 µs
benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]
benchmarks/sequence/align/benchmark_kmers.py0%
14.2 ms14.2 ms
benchmark_lddt[True-atom]
benchmarks/structure/benchmark_compare.py0%
1.9 s1.9 s
Commits
Click on a commit to change the comparison rangeBase
main
ac856a2
+0.03%
chore: ruff
6ede054
7 months ago
by Croydon-Brixton