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feat: add `write_tiff` export to OME-TIFF, include full metadata as StructuredAnnotation(#216)

Merged
Merging
update-ome
(
cffe615
) into
main
(
256ef22
)
0%
IMPROVEMENTS
0
REGRESSIONS
0
UNTOUCHED
13
NEW
0
DROPPED
0
IGNORED
0

Benchmarks

Passed

test_time_imread_dask[jonas_control002]
tests/test_codspeed.py::test_time_imread_dask[jonas_control002]
+6%
816.5 ms
767.1 ms
test_time_all_metadata[jonas_control002]
tests/test_codspeed.py::test_time_all_metadata[jonas_control002]
+1%
7.8 ms
7.7 ms
test_time_all_metadata[dims_p2z5t3-2c4y32x32]
tests/test_codspeed.py::test_time_all_metadata[dims_p2z5t3-2c4y32x32]
0%
37.5 ms
37.4 ms
test_time_imread_dask[karl_sample_image]
tests/test_codspeed.py::test_time_imread_dask[karl_sample_image]
0%
1.1 s
1.1 s
test_time_imread[karl_sample_image]
tests/test_codspeed.py::test_time_imread[karl_sample_image]
0%
426.6 ms
426.7 ms
test_time_imread_dask[train_TR67_Inj7_fr50]
tests/test_codspeed.py::test_time_imread_dask[train_TR67_Inj7_fr50]
0%
235 ms
235.1 ms
test_time_imread_dask[dims_p2z5t3-2c4y32x32]
tests/test_codspeed.py::test_time_imread_dask[dims_p2z5t3-2c4y32x32]
0%
57.5 ms
57.5 ms
test_time_imread[train_TR67_Inj7_fr50]
tests/test_codspeed.py::test_time_imread[train_TR67_Inj7_fr50]
0%
74.3 ms
74.4 ms
test_time_all_metadata[train_TR67_Inj7_fr50]
tests/test_codspeed.py::test_time_all_metadata[train_TR67_Inj7_fr50]
0%
36.8 ms
36.9 ms
test_time_imread[jonas_control002]
tests/test_codspeed.py::test_time_imread[jonas_control002]
0%
58.3 ms
58.5 ms
test_time_all_metadata[karl_sample_image]
tests/test_codspeed.py::test_time_all_metadata[karl_sample_image]
0%
63.8 ms
64.1 ms
test_time_all_metadata[aryeh_but3_cont200-1]
tests/test_codspeed.py::test_time_all_metadata[aryeh_but3_cont200-1]
-1%
19 ms
19.1 ms
test_time_imread[dims_p2z5t3-2c4y32x32]
tests/test_codspeed.py::test_time_imread[dims_p2z5t3-2c4y32x32]
-1%
32.8 ms
33.1 ms

Commits

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base
main
256ef22
0%
remove breakpoint
6c84b00
6 months ago
by tlambert03
0%
working well
09f6f6b
6 months ago
by tlambert03
0%
cleanup
f3c3920
6 months ago
by tlambert03
0%
public exports
2002674
6 months ago
by tlambert03
0%
future import
c17fb89
6 months ago
by tlambert03
-2%
test more things
124b04d
6 months ago
by tlambert03
+2%
docs
f2f910d
6 months ago
by tlambert03
0%
style(pre-commit.ci): auto fixes [...]
aa42cc6
6 months ago
by pre-commit-ci[bot]
0%
Merge branch 'update-ome' of https://github.com/tlambert03/nd2 into update-ome
b3ace84
6 months ago
by tlambert03
0%
unify changes
7012866
6 months ago
by tlambert03
0%
force tst
cffe615
6 months ago
by tlambert03
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