pa/cs-dataset - Branch - scverse/fast-array-utils

`anndata.abc.CS{RC}Dataset` support

#50Merged

Comparing

pa/cs-dataset

(

1af2d6a

) with

main

(

c854c5b

)

-15%

Regressions: 2
(
2
)

Untouched: 86

Benchmarks

Passed

test_stats_benchmark[1-numpy.ndarray-float64-mean]

tests/test_stats.py

+1%

154.9 µs153.7 µs

test_stats_benchmark[1-numpy.ndarray-float64-sum]

tests/test_stats.py

+1%

135.5 µs134.4 µs

test_stats_benchmark[None-numpy.ndarray-float64-sum]

tests/test_stats.py

+1%

128.4 µs127.5 µs

test_stats_benchmark[None-scipy.sparse.csr_array-float32-is_constant]

tests/test_stats.py

+1%

112.7 µs112.1 µs

test_stats_benchmark[None-scipy.sparse.csr_array-float64-is_constant]

tests/test_stats.py

+1%

132.3 µs131.6 µs

test_stats_benchmark[1-numpy.ndarray-float64-is_constant]

tests/test_stats.py

267.5 µs266.2 µs

test_stats_benchmark[None-numpy.ndarray-float64-mean]

tests/test_stats.py

165.3 µs164.5 µs

test_stats_benchmark[0-numpy.ndarray-float32-is_constant]

tests/test_stats.py

226.8 µs225.7 µs

test_stats_benchmark[0-numpy.ndarray-float64-is_constant]

tests/test_stats.py

271.5 µs270.2 µs

test_stats_benchmark[1-numpy.ndarray-float32-is_constant]

tests/test_stats.py

224.7 µs223.8 µs

test_stats_benchmark[None-scipy.sparse.csr_array-float32-sum]

tests/test_stats.py

257.1 µs256.4 µs

test_stats_benchmark[0-scipy.sparse.csc_array-float64-mean]

tests/test_stats.py

351.4 µs350.7 µs

test_stats_benchmark[0-scipy.sparse.csc_array-float32-is_constant]

tests/test_stats.py

97.2 µs97 µs

test_stats_benchmark[1-numpy.ndarray-float64-mean_var]

tests/test_stats.py

261.4 µs261 µs

test_stats_benchmark[1-numpy.ndarray-float32-mean_var]

tests/test_stats.py

279.4 µs279.1 µs

test_stats_benchmark[1-scipy.sparse.csr_array-float32-sum]

tests/test_stats.py

310.7 µs310.5 µs

test_stats_benchmark[1-scipy.sparse.csr_array-float32-mean]

tests/test_stats.py

325.6 µs325.4 µs

test_stats_benchmark[0-scipy.sparse.csc_array-float64-sum]

tests/test_stats.py

336.4 µs336.2 µs

test_stats_benchmark[1-scipy.sparse.csc_array-float32-mean_var]

tests/test_stats.py

339 µs338.8 µs

test_stats_benchmark[0-numpy.ndarray-float64-mean]

tests/test_stats.py

157.4 µs157.4 µs

test_stats_benchmark[1-scipy.sparse.csc_array-float32-mean]

tests/test_stats.py

296.4 µs296.3 µs

test_stats_benchmark[0-numpy.ndarray-float32-mean_var]

tests/test_stats.py

286 µs286 µs

test_stats_benchmark[None-scipy.sparse.csr_array-float64-sum]

tests/test_stats.py

280.3 µs280.3 µs

test_stats_benchmark[None-scipy.sparse.csr_array-float64-mean]

tests/test_stats.py

305.9 µs305.9 µs

test_to_dense_benchmark[float32-scipy.sparse.csc_matrix-C]

tests/test_sparse.py

4.2 ms4.2 ms

test_to_dense_benchmark[float32-scipy.sparse.csc_array-F]

tests/test_sparse.py

4.2 ms4.2 ms

test_to_dense_benchmark[float32-scipy.sparse.csr_matrix-F]

tests/test_sparse.py

4.2 ms4.2 ms

test_to_dense_benchmark[float32-scipy.sparse.csc_matrix-F]

tests/test_sparse.py

4.2 ms4.2 ms

test_stats_benchmark[0-scipy.sparse.csr_array-float64-mean_var]

tests/test_stats.py

349.4 µs349.4 µs

test_stats_benchmark[None-scipy.sparse.csr_array-float64-mean_var]

tests/test_stats.py

667.2 µs667.2 µs

test_to_dense_benchmark[float32-scipy.sparse.csr_matrix-C]

tests/test_sparse.py

4.2 ms4.2 ms

test_to_dense_benchmark[float32-scipy.sparse.csc_array-C]

tests/test_sparse.py

4.2 ms4.2 ms

test_to_dense_benchmark[float32-scipy.sparse.csr_array-F]

tests/test_sparse.py

4.2 ms4.2 ms

test_stats_benchmark[0-scipy.sparse.csr_array-float32-mean_var]

tests/test_stats.py

336 µs336 µs

test_stats_benchmark[0-scipy.sparse.csc_array-float64-mean_var]

tests/test_stats.py

180.7 µs180.7 µs

test_stats_benchmark[0-scipy.sparse.csc_array-float64-is_constant]

tests/test_stats.py

106.1 µs106.1 µs

test_stats_benchmark[0-numpy.ndarray-float64-mean_var]

tests/test_stats.py

267.1 µs267.2 µs

test_to_dense_benchmark[float64-scipy.sparse.csr_array-C]

tests/test_sparse.py

8.3 ms8.3 ms

test_stats_benchmark[None-scipy.sparse.csr_array-float32-mean]

tests/test_stats.py

295.6 µs295.7 µs

test_to_dense_benchmark[float64-scipy.sparse.csr_matrix-C]

tests/test_sparse.py

8.3 ms8.3 ms

test_to_dense_benchmark[float64-scipy.sparse.csc_array-F]

tests/test_sparse.py

8.3 ms8.3 ms

test_to_dense_benchmark[float64-scipy.sparse.csc_matrix-F]

tests/test_sparse.py

8.3 ms8.3 ms

test_to_dense_benchmark[float64-scipy.sparse.csr_matrix-F]

tests/test_sparse.py

8.3 ms8.3 ms

test_to_dense_benchmark[float32-scipy.sparse.csr_array-C]

tests/test_sparse.py

4.2 ms4.2 ms

test_to_dense_benchmark[float64-scipy.sparse.csc_matrix-C]

tests/test_sparse.py

8.3 ms8.3 ms

test_to_dense_benchmark[float64-scipy.sparse.csr_array-F]

tests/test_sparse.py

8.3 ms8.3 ms

test_stats_benchmark[1-scipy.sparse.csr_array-float64-mean_var]

tests/test_stats.py

176.4 µs176.5 µs

test_to_dense_benchmark[float64-scipy.sparse.csc_array-C]

tests/test_sparse.py

8.3 ms8.3 ms

test_stats_benchmark[1-scipy.sparse.csc_array-float64-mean_var]

tests/test_stats.py

353.1 µs353.2 µs

test_stats_benchmark[1-scipy.sparse.csr_array-float32-mean_var]

tests/test_stats.py

161 µs161 µs

test_stats_benchmark[1-scipy.sparse.csc_array-float32-sum]

tests/test_stats.py

279 µs279.1 µs

test_stats_benchmark[None-scipy.sparse.csc_array-float32-mean_var]

tests/test_stats.py

648.7 µs649 µs

test_stats_benchmark[None-numpy.ndarray-float32-mean_var]

tests/test_stats.py

289.6 µs289.7 µs

test_stats_benchmark[1-scipy.sparse.csc_array-float64-is_constant]

tests/test_stats.py

602.1 µs602.5 µs

test_stats_benchmark[1-scipy.sparse.csr_array-float64-mean]

tests/test_stats.py

356 µs356.3 µs

test_stats_benchmark[0-scipy.sparse.csc_array-float32-mean_var]

tests/test_stats.py

164 µs164.1 µs

test_stats_benchmark[1-scipy.sparse.csr_array-float64-sum]

tests/test_stats.py

335.4 µs335.8 µs

test_stats_benchmark[0-numpy.ndarray-float64-sum]

tests/test_stats.py

139 µs139.1 µs

test_stats_benchmark[None-scipy.sparse.csc_array-float32-mean]

tests/test_stats.py

308.4 µs309 µs

test_stats_benchmark[1-numpy.ndarray-float32-mean]

tests/test_stats.py

134.6 µs134.8 µs

test_stats_benchmark[0-scipy.sparse.csr_array-float64-is_constant]

tests/test_stats.py

604.3 µs605.6 µs

test_stats_benchmark[None-numpy.ndarray-float64-mean_var]

tests/test_stats.py

275.3 µs276.1 µs

test_stats_benchmark[None-scipy.sparse.csc_array-float32-is_constant]

tests/test_stats.py

111.7 µs112 µs

test_stats_benchmark[None-scipy.sparse.csc_array-float64-mean]

tests/test_stats.py

317.3 µs318.2 µs

test_stats_benchmark[0-scipy.sparse.csr_array-float32-is_constant]

tests/test_stats.py

563.8 µs565.5 µs

test_stats_benchmark[None-scipy.sparse.csc_array-float64-mean_var]

tests/test_stats.py

693.6 µs696 µs

test_stats_benchmark[1-scipy.sparse.csc_array-float32-is_constant]

tests/test_stats.py

562.6 µs564.6 µs

test_stats_benchmark[1-numpy.ndarray-float32-sum]

tests/test_stats.py

117.2 µs117.6 µs

test_stats_benchmark[None-numpy.ndarray-float32-mean]

tests/test_stats.py

160 µs160.6 µs

test_stats_benchmark[None-scipy.sparse.csc_array-float64-sum]

tests/test_stats.py

291.5 µs292.6 µs

test_stats_benchmark[None-scipy.sparse.csr_array-float32-mean_var]

tests/test_stats.py

627.4 µs629.9 µs

test_stats_benchmark[None-scipy.sparse.csc_array-float32-sum]

tests/test_stats.py

272.6 µs273.7 µs

test_stats_benchmark[None-scipy.sparse.csc_array-float64-is_constant]

tests/test_stats.py

133 µs133.6 µs

test_stats_benchmark[1-scipy.sparse.csc_array-float64-mean]

tests/test_stats.py

319.8 µs321.4 µs

test_stats_benchmark[None-numpy.ndarray-float32-sum]

tests/test_stats.py

-1%

109.3 µs109.9 µs

test_stats_benchmark[None-numpy.ndarray-float64-is_constant]

tests/test_stats.py

-1%

129.4 µs130.1 µs

test_stats_benchmark[1-scipy.sparse.csc_array-float64-sum]

tests/test_stats.py

-1%

302.8 µs304.8 µs

test_stats_benchmark[None-numpy.ndarray-float32-is_constant]

tests/test_stats.py

-1%

109 µs109.7 µs

test_stats_benchmark[0-scipy.sparse.csr_array-float64-mean]

tests/test_stats.py

-1%

432.9 µs436.2 µs

test_stats_benchmark[0-scipy.sparse.csr_array-float64-sum]

tests/test_stats.py

-1%

420.6 µs424.1 µs

test_stats_benchmark[0-scipy.sparse.csc_array-float32-sum]

tests/test_stats.py

-1%

311.2 µs314.8 µs

test_stats_benchmark[0-scipy.sparse.csc_array-float32-mean]

tests/test_stats.py

-1%

325.7 µs329.5 µs

test_stats_benchmark[0-scipy.sparse.csr_array-float32-sum]

tests/test_stats.py

-1%

394.6 µs399.3 µs

test_stats_benchmark[0-scipy.sparse.csr_array-float32-mean]

tests/test_stats.py

-2%

408.2 µs414.8 µs

test_stats_benchmark[0-numpy.ndarray-float32-mean]

tests/test_stats.py

-6%

133.6 µs142.1 µs

test_stats_benchmark[0-numpy.ndarray-float32-sum]

tests/test_stats.py

-7%

115.3 µs124.2 µs

test_stats_benchmark[1-scipy.sparse.csr_array-float32-is_constant]

tests/test_stats.py

Regression

-14%

277.1 µs323.7 µs

test_stats_benchmark[1-scipy.sparse.csr_array-float64-is_constant]

tests/test_stats.py

Regression

-15%

103.1 µs120.7 µs

Commits

Click on a commit to change the comparison range

Base

main

c854c5b

+98.41%

editorconfig

5d033e7

9 months ago

by flying-sheep

-77.21%

I hate mypy

4c1bbc4

9 months ago

by flying-sheep

-6.02%

to_dense works

31afbf1

9 months ago

by flying-sheep

×3

fix test_array_types

b7ceaee

9 months ago

by flying-sheep

fix ArrayType

ab85187

9 months ago

by flying-sheep

-13.04%

improve array type

c5654a5

9 months ago

by flying-sheep

-11.42%

skip individual array types

54c12c7

9 months ago

by flying-sheep

+29.18%

mypy :(

1af2d6a

9 months ago

by flying-sheep

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