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pygmt.grd2xyz: Improve performance by storing output in virtual files(#3097)

Merged
Merging
output/grd2xyz
(
2c5aeb3
) into
main
(
0b46aad
)
-84%
IMPROVEMENTS
0
REGRESSIONS
1
UNTOUCHED
97
NEW
0
DROPPED
0
IGNORED
0

Benchmarks

Failing

test_grd2xyzRegression
pygmt/tests/test_grd2xyz.py::test_grd2xyz
-84%
9.8 ms
62.7 ms

Passing

test_accessor_set_geographic_cartesian_roundtrip
pygmt/tests/test_accessor.py::test_accessor_set_geographic_cartesian_roundtrip
-1%
307 µs
310.5 µs
test_basemap
pygmt/tests/test_basemap.py::test_basemap
0%
16.1 ms
16.1 ms
test_binstats_no_outgrid
pygmt/tests/test_binstats.py::test_binstats_no_outgrid
0%
32.1 ms
32.1 ms
test_blockmean_input_xyz
pygmt/tests/test_blockm.py::test_blockmean_input_xyz
0%
74.8 ms
74.8 ms
test_blockmode_input_dataframe
pygmt/tests/test_blockm.py::test_blockmode_input_dataframe
0%
113.2 ms
113 ms
test_blockmedian_input_table_matrix
pygmt/tests/test_blockmedian.py::test_blockmedian_input_table_matrix
0%
111.6 ms
111.5 ms
test_call_module
pygmt/tests/test_clib.py::test_call_module
0%
11.4 ms
11.5 ms
test_dataarray_to_matrix_works
pygmt/tests/test_clib.py::test_dataarray_to_matrix_works
0%
2.4 ms
2.4 ms
test_load_libgmt
pygmt/tests/test_clib_loading.py::test_load_libgmt
0%
350.8 µs
349.6 µs
test_put_matrix
pygmt/tests/test_clib_put_matrix.py::test_put_matrix
0%
23.7 ms
23.8 ms
test_put_matrix_grid
pygmt/tests/test_clib_put_matrix.py::test_put_matrix_grid
0%
62.7 ms
62.8 ms
test_put_strings
pygmt/tests/test_clib_put_strings.py::test_put_strings
0%
3.6 ms
3.6 ms
test_put_vector
pygmt/tests/test_clib_put_vector.py::test_put_vector
0%
28.1 ms
28.1 ms
test_put_vector_string_dtype
pygmt/tests/test_clib_put_vector.py::test_put_vector_string_dtype
0%
27.1 ms
27.1 ms
test_virtual_file
pygmt/tests/test_clib_virtualfiles.py::test_virtual_file
0%
93.5 ms
93.9 ms
test_virtualfile_from_matrix
pygmt/tests/test_clib_virtualfiles.py::test_virtualfile_from_matrix
0%
93.8 ms
94.2 ms
test_virtualfile_from_vectors
pygmt/tests/test_clib_virtualfiles.py::test_virtualfile_from_vectors
0%
94.7 ms
95.2 ms
test_virtualfile_from_vectors_one_string_or_object_column[object]
pygmt/tests/test_clib_virtualfiles.py::test_virtualfile_from_vectors_one_string_or_object_column[object]
-1%
11.6 ms
11.7 ms
test_virtualfile_from_vectors_one_string_or_object_column[str]
pygmt/tests/test_clib_virtualfiles.py::test_virtualfile_from_vectors_one_string_or_object_column[str]
0%
11.6 ms
11.7 ms
test_virtualfile_in_required_z_matrix[DataFrame-vector]
pygmt/tests/test_clib_virtualfiles.py::test_virtualfile_in_required_z_matrix[DataFrame-vector]
0%
12.6 ms
12.6 ms
test_virtualfile_in_required_z_matrix[Dataset-vector]
pygmt/tests/test_clib_virtualfiles.py::test_virtualfile_in_required_z_matrix[Dataset-vector]
0%
15.1 ms
15.2 ms
test_virtualfile_in_required_z_matrix[array-matrix]
pygmt/tests/test_clib_virtualfiles.py::test_virtualfile_in_required_z_matrix[array-matrix]
0%
12.2 ms
12.2 ms
test_coast_region
pygmt/tests/test_coast.py::test_coast_region
0%
476.7 ms
476.1 ms
test_colorbar
pygmt/tests/test_colorbar.py::test_colorbar
0%
16.4 ms
16.4 ms
test_config_format_date_map
pygmt/tests/test_config.py::test_config_format_date_map
0%
47.4 ms
47.6 ms
test_contour_matrix[DataFrame]
pygmt/tests/test_contour.py::test_contour_matrix[DataFrame]
0%
18.2 ms
18.1 ms
test_contour_matrix[Dataset]
pygmt/tests/test_contour.py::test_contour_matrix[Dataset]
0%
20.7 ms
20.6 ms
test_contour_matrix[array]
pygmt/tests/test_contour.py::test_contour_matrix[array]
0%
17.7 ms
17.7 ms
test_load_remote_dataset_benchmark_with_region
pygmt/tests/test_datasets_load_remote_datasets.py::test_load_remote_dataset_benchmark_with_region
0%
29.3 ms
29.3 ms
test_earth_relief_holes
pygmt/tests/test_datasets_samples.py::test_earth_relief_holes
0%
25.9 ms
25.9 ms
test_dimfilter_no_outgrid
pygmt/tests/test_dimfilter.py::test_dimfilter_no_outgrid
0%
18.1 ms
18.1 ms
test_figure_repr
pygmt/tests/test_figure.py::test_figure_repr
0%
36.8 ms
36.8 ms
test_filter1d_format
pygmt/tests/test_filter1d.py::test_filter1d_format
0%
37.1 ms
37.1 ms
test_geopandas_info_geodataframe
pygmt/tests/test_geopandas.py::test_geopandas_info_geodataframe
0%
23 ms
23.1 ms
test_grd2cpt
pygmt/tests/test_grd2cpt.py::test_grd2cpt
0%
42.8 ms
42.7 ms
test_grdclip_no_outgrid
pygmt/tests/test_grdclip.py::test_grdclip_no_outgrid
0%
18.1 ms
18 ms
test_grdcontour_labels
pygmt/tests/test_grdcontour.py::test_grdcontour_labels
0%
19.7 ms
19.7 ms
test_grdcut_dataarray_in_dataarray_out
pygmt/tests/test_grdcut.py::test_grdcut_dataarray_in_dataarray_out
0%
18 ms
18 ms
test_grdfill_dataarray_out
pygmt/tests/test_grdfill.py::test_grdfill_dataarray_out
0%
18 ms
18 ms
test_grdfilter_dataarray_in_dataarray_out
pygmt/tests/test_grdfilter.py::test_grdfilter_dataarray_in_dataarray_out
0%
18.2 ms
18.2 ms
test_grdgradient_no_outgrid
pygmt/tests/test_grdgradient.py::test_grdgradient_no_outgrid
0%
18 ms
18.1 ms
test_compute_bins_no_outfile
pygmt/tests/test_grdhisteq.py::test_compute_bins_no_outfile
0%
10.9 ms
10.9 ms
test_equalize_grid_no_outgrid
pygmt/tests/test_grdhisteq.py::test_equalize_grid_no_outgrid
0%
18 ms
18 ms
test_grdimage_grid_and_shading_with_xarray[png]
pygmt/tests/test_grdimage.py::test_grdimage_grid_and_shading_with_xarray[png]
0%
1.3 s
1.3 s
test_grdinfo
pygmt/tests/test_grdinfo.py::test_grdinfo
0%
8.2 ms
8.2 ms
test_grdlandmask_no_outgrid
pygmt/tests/test_grdlandmask.py::test_grdlandmask_no_outgrid
-1%
142 ms
144.1 ms
test_grdproject_no_outgrid[+proj=merc +ellps=WGS84 +units=m +width=10]
pygmt/tests/test_grdproject.py::test_grdproject_no_outgrid[+proj=merc +ellps=WGS84 +units=m +width=10]
0%
21.5 ms
21.4 ms
test_grdproject_no_outgrid[EPSG:3395 +width=10]
pygmt/tests/test_grdproject.py::test_grdproject_no_outgrid[EPSG:3395 +width=10]
0%
21.6 ms
21.6 ms
test_grdproject_no_outgrid[M10c]
pygmt/tests/test_grdproject.py::test_grdproject_no_outgrid[M10c]
0%
21.1 ms
21.1 ms
test_grdsample_dataarray_out
pygmt/tests/test_grdsample.py::test_grdsample_dataarray_out
-1%
18.8 ms
19 ms
test_grdtrack_input_dataframe_and_dataarray
pygmt/tests/test_grdtrack.py::test_grdtrack_input_dataframe_and_dataarray
0%
10.1 ms
10.1 ms
test_grdview_drapegrid_dataarray
pygmt/tests/test_grdview.py::test_grdview_drapegrid_dataarray
0%
1.3 s
1.3 s
test_grdvolume_no_outgrid
pygmt/tests/test_grdvolume.py::test_grdvolume_no_outgrid
0%
9.6 ms
9.6 ms
test_histogram[Series]
pygmt/tests/test_histogram.py::test_histogram[Series]
0%
16.5 ms
16.5 ms
test_histogram[list]
pygmt/tests/test_histogram.py::test_histogram[list]
0%
16.5 ms
16.5 ms
test_info_pandas_dataframe_date_column[date32[day][pyarrow]]
pygmt/tests/test_info.py::test_info_pandas_dataframe_date_column[date32[day][pyarrow]]
0%
14.1 ms
14.1 ms
test_info_pandas_dataframe_date_column[date64[ms][pyarrow]]
pygmt/tests/test_info.py::test_info_pandas_dataframe_date_column[date64[ms][pyarrow]]
0%
14.1 ms
14.1 ms
test_info_pandas_dataframe_date_column[datetime64[ns]]
pygmt/tests/test_info.py::test_info_pandas_dataframe_date_column[datetime64[ns]]
0%
14 ms
14 ms
test_info_xarray_dataset_time_column
pygmt/tests/test_info.py::test_info_xarray_dataset_time_column
0%
14 ms
14.1 ms
test_inset_aliases
pygmt/tests/test_inset.py::test_inset_aliases
0%
568.7 ms
569.5 ms
test_io_load_dataarray
pygmt/tests/test_io.py::test_io_load_dataarray
0%
24.9 ms
24.9 ms
test_legend_entries
pygmt/tests/test_legend.py::test_legend_entries
0%
132.9 ms
132.8 ms
test_logo
pygmt/tests/test_logo.py::test_logo
0%
181 ms
181.3 ms
test_makecpt_output_cpt_file
pygmt/tests/test_makecpt.py::test_makecpt_output_cpt_file
0%
12.1 ms
12.1 ms
test_meca_spec_multiple_focalmecha[array2d]
pygmt/tests/test_meca.py::test_meca_spec_multiple_focalmecha[array2d]
0%
33 ms
33.1 ms
test_meca_spec_multiple_focalmecha[dataframe]
pygmt/tests/test_meca.py::test_meca_spec_multiple_focalmecha[dataframe]
0%
33.7 ms
33.7 ms
test_meca_spec_multiple_focalmecha[dict_mecha]
pygmt/tests/test_meca.py::test_meca_spec_multiple_focalmecha[dict_mecha]
0%
34.1 ms
34.1 ms
test_meca_spec_multiple_focalmecha[dict_mecha_mixed]
pygmt/tests/test_meca.py::test_meca_spec_multiple_focalmecha[dict_mecha_mixed]
0%
34.2 ms
34.2 ms
test_nearneighbor_input_xyz
pygmt/tests/test_nearneighbor.py::test_nearneighbor_input_xyz
0%
1.4 s
1.4 s
test_plot_vectors
pygmt/tests/test_plot.py::test_plot_vectors
0%
17.2 ms
17.2 ms
test_plot3d_vectors
pygmt/tests/test_plot3d.py::test_plot3d_vectors
0%
17.7 ms
17.7 ms
test_project_input_matrix[DataFrame]
pygmt/tests/test_project.py::test_project_input_matrix[DataFrame]
0%
9.6 ms
9.6 ms
test_project_input_matrix[Dataset]
pygmt/tests/test_project.py::test_project_input_matrix[Dataset]
0%
11.4 ms
11.4 ms
test_project_input_matrix[array]
pygmt/tests/test_project.py::test_project_input_matrix[array]
0%
9.4 ms
9.4 ms
test_psconvert
pygmt/tests/test_psconvert.py::test_psconvert
0%
26.7 ms
26.7 ms
test_rose_plot_data_using_cpt
pygmt/tests/test_rose.py::test_rose_plot_data_using_cpt
0%
18.9 ms
19 ms
test_select_input_dataframe
pygmt/tests/test_select.py::test_select_input_dataframe
0%
36 ms
36 ms
test_begin_end
pygmt/tests/test_session_management.py::test_begin_end
0%
38.1 ms
38.2 ms
test_solar_set_terminator_datetime[terminator_datetime1]
pygmt/tests/test_solar.py::test_solar_set_terminator_datetime[terminator_datetime1]
0%
25.5 ms
25.5 ms
test_solar_set_terminator_datetime[terminator_datetime_string]
pygmt/tests/test_solar.py::test_solar_set_terminator_datetime[terminator_datetime_string]
0%
26.4 ms
26.3 ms
test_sph2grd_no_outgrid
pygmt/tests/test_sph2grd.py::test_sph2grd_no_outgrid
-1%
414.1 ms
416.6 ms
test_sphdistance_no_outgrid
pygmt/tests/test_sphdistance.py::test_sphdistance_no_outgrid
0%
148.7 ms
148.7 ms
test_sphinterpolate_no_outgrid
pygmt/tests/test_sphinterpolate.py::test_sphinterpolate_no_outgrid
0%
74 ms
73.8 ms
test_subplot_basic_frame
pygmt/tests/test_subplot.py::test_subplot_basic_frame
0%
64.2 ms
64.1 ms
test_surface_input_xyz
pygmt/tests/test_surface.py::test_surface_input_xyz
0%
25.8 ms
25.8 ms
test_ternary_3_labels
pygmt/tests/test_ternary.py::test_ternary_3_labels
0%
27.8 ms
27.8 ms
test_text_multiple_lines_of_text
pygmt/tests/test_text.py::test_text_multiple_lines_of_text
0%
19.8 ms
19.8 ms
test_timestamp_font
pygmt/tests/test_timestamp.py::test_timestamp_font
0%
16 ms
16 ms
test_delaunay_triples_input_xyz
pygmt/tests/test_triangulate.py::test_delaunay_triples_input_xyz
0%
44.9 ms
44.9 ms
test_regular_grid_no_outgrid
pygmt/tests/test_triangulate.py::test_regular_grid_no_outgrid
0%
77.4 ms
77.3 ms
test_velo_pandas_dataframe
pygmt/tests/test_velo.py::test_velo_pandas_dataframe
0%
23.4 ms
23.4 ms
test_which_multiple
pygmt/tests/test_which.py::test_which_multiple
0%
15.7 ms
15.8 ms
test_wiggle_data_incols
pygmt/tests/test_wiggle.py::test_wiggle_data_incols
0%
16.6 ms
16.6 ms
test_x2sys_cross_input_dataframe_output_dataframe
pygmt/tests/test_x2sys_cross.py::test_x2sys_cross_input_dataframe_output_dataframe
0%
27.2 ms
27.3 ms
test_x2sys_init_units_gap
pygmt/tests/test_x2sys_init.py::test_x2sys_init_units_gap
0%
12.6 ms
12.6 ms
test_xyz2grd_input_array[Dataset]
pygmt/tests/test_xyz2grd.py::test_xyz2grd_input_array[Dataset]
0%
46.9 ms
46.9 ms
test_xyz2grd_input_array[array]
pygmt/tests/test_xyz2grd.py::test_xyz2grd_input_array[array]
0%
49 ms
49 ms

Commits

Click on a commit to change the comparison range
base
main
0b46aad
-84%
Fix
868529c
5 months ago
by seisman
0%
Combine two grd2xyz tests into a single one
37e48b8
5 months ago
by seisman
0%
Type hints for column names
218efcf
5 months ago
by seisman
0%
Merge branch 'main' into output/grd2xyz
2c5aeb3
5 months ago
by seisman
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